Baked in a muffin pan, mini pumpkin cheesecakes are one of my favorite fall treats. Each individual cheesecake sits on a cinnamon graham cracker crust and is filled with a creamy pumpkin-spiced cheesecake mixture. They’re easy to serve and perfect for gatherings, tying with mini pumpkin pies for a convenient seasonal dessert.
These mini cheesecakes are delicious on their own, but I often top them with a swirl of vanilla whipped cream and a drizzle of salted caramel for extra decadence. The cheesecake itself isn’t overly sweet, so a touch of caramel adds a lovely contrast without overpowering the pumpkin and spice.

“These mini cheesecakes are so easy to make! Cheesecake always intimidates me, but making it in the food processor is such a great idea! These were quick and easy and so delicious. I made these for a party and they disappeared instantly.” -Abby
Ingredients for Mini Pumpkin Cheesecakes
These mini pumpkin cheesecakes use a cinnamon graham cracker crust and a smooth pumpkin cheesecake filling. For serving, top with vanilla whipped cream and a drizzle of salted caramel if you like a richer finish.
- Graham crackers. Cinnamon- or honey-flavored graham crackers work best for the crust. Gluten-free graham crackers or Biscoff cookies are good substitutes if you want a different flavor profile.
- Salted butter. Melted butter binds the crumbs and helps create a crunchy crust. Unsalted is fine if you prefer—just add a touch more salt elsewhere if needed.
- Salt. A small amount enhances the overall flavor.
- Ground cinnamon. Adds warm spice to the crust.
- Cream cheese. Use full-fat block-style cream cheese for best texture and stability.
- Pumpkin puree. Use 100% pumpkin puree, not pumpkin pie filling, for flavor and texture.
- Brown sugar. Adds sweetness, moisture, and a hint of molasses.
- Vanilla extract. Vanilla extract or paste brightens the filling.
- Pumpkin pie spice. A blend of cinnamon, nutmeg, ginger, and allspice complements the pumpkin. A substitute mix is noted in the recipe.
- Egg. One egg helps set the custard for a creamy but firm cheesecake.

How to Make Pumpkin Cheesecakes in a Muffin Pan
Mini cheesecakes baked in a muffin pan are simpler than full-size cheesecakes: no water bath, faster bake time, and easy individual servings. Below are the essential steps for success, with tips to keep the filling smooth and prevent cracking.
How to Make the Graham Cracker Crust
Line a 12-cup muffin pan with paper liners. Parchment liners stick less and make serving easier, but regular liners work too.
Crush the graham crackers in a food processor or in a sealed bag with a rolling pin until fine. Add cinnamon and salt, then stream in melted butter while processing until all crumbs are evenly coated.


Divide the crumb mixture evenly among the liners, about one lightly packed tablespoon per cup. Press the crumbs flat using a flat-bottomed measuring cup, a small glass, or your fingers. An extra paper liner between the measuring cup and crust helps reduce mess and makes cleanup easier.

Pressing the crust firmly ensures a sturdy base that holds up to filling and serving.
How to Make the Pumpkin Cheesecake Filling
To avoid incorporating too much air (which can cause cracks), I make the filling in a food processor. It mixes ingredients thoroughly while minimizing aeration. If you don’t have a food processor, use a hand mixer or stand mixer on low speed.
Add softened cream cheese, brown sugar, pumpkin puree, vanilla, spices, and a pinch of salt to the food processor. Pulse until smooth, scrape down the bowl, then pulse a few more times. Add the egg and pulse just until combined—overmixing will introduce air.


Make sure the filling is smooth and free of cream cheese lumps by scraping the sides as needed. The finished mixture should be creamy and slightly voluminous.


How to Fill Mini Pumpkin Cheesecakes
Fill each liner evenly so the cheesecakes bake uniformly. Aim to fill each cup about two-thirds full first, then top up so each cup holds roughly 3 tablespoons of filling. Because liners vary, this two-step approach helps get consistent results.

How to Bake Mini Pumpkin Cheesecakes
Bake at 350°F (175°C) for about 13–17 minutes depending on your pan color and oven. Light pans may take closer to 16 minutes; dark pans often bake faster. Bake until the edges are set and the centers are only slightly jiggly.
It’s normal if some cheesecakes are a little more set than others. For firmer results, add one or two extra minutes. Remove the pan from the oven and let the cheesecakes cool in the pan for about an hour.


How to Remove Mini Cheesecakes from a Muffin Pan
Removing the cheesecakes is simple. When the pan is cool enough to handle, pinch the top of the paper liner and pull up quickly to unstick the cheesecake. If you’d rather not use your fingers, slide an offset spatula, knife, or fork between the liner and pan to lift them out—be careful not to scratch the pan.
Once removed, place the cheesecakes on a rack or plate and chill in the refrigerator for at least two hours. They’re best served cold.

How to Top Mini Pumpkin Cheesecakes
I love topping these with vanilla whipped cream and a drizzle of salted caramel. A light dusting of pumpkin pie spice also makes a pretty finish. These toppings elevate the flavor and give a lovely presentation for guests.

FAQs about Mini Cheesecakes
Yes. A Biscoff cookie crust or a graham cracker pecan crust are both delicious alternatives that pair well with pumpkin spice.
The recipe delivers a clear pumpkin flavor balanced with warm spices. Increasing the pumpkin too much can lead to a less distinct pumpkin taste, so the proportions here were chosen for the best balance.
Store in an airtight container in the refrigerator for up to five days. For longer storage, freeze in an airtight container for up to six months.
Other Recipes You May Enjoy
If you enjoy mini cheesecakes, you might also like Biscoff or turtle mini cheesecakes and other muffin-pan desserts like mini pies and muffins. Pumpkin cheesecake macarons offer a similar flavor in an elegant, individually sized treat.
Dish Cleanup: A Lil Messy
I rate cleanup on a scale of 1 to 5. These mini pumpkin cheesecakes are about a 3: you’ll have the food processor bowl, a few small bowls for ingredients, and a muffin pan. Rinse the food processor bowl soon after baking to make cleanup easier.

Mini Pumpkin Spice Cheesecakes Recipe
Thanks for stopping by! If you make these mini pumpkin cheesecakes and enjoy them, please consider leaving a review to help others find the recipe.

Mini Pumpkin Cheesecakes
Ingredients
For the Graham Cracker Crust
- 8 sheets (125 g) cinnamon graham crackers
- 4 Tablespoons (56 g) salted butter, melted
- ½ teaspoon ground cinnamon
- ¼ teaspoon salt
For the Pumpkin Cheesecake Filling
- 12 oz (340 g) cream cheese (1.5 blocks), softened
- ½ cup (125 g) pumpkin puree
- ½ cup (105 g) brown sugar, packed
- 1 teaspoon vanilla extract
- 2 teaspoons pumpkin pie spice
- pinch of salt
- 1 large egg, at room temperature
Instructions
To Make the Pumpkin Cheesecake Crust
- Preheat oven to 350°F (175°C). Line a 12-cup muffin pan with paper liners.
- Crush the graham crackers in a food processor or in a sealed bag until fine. With the processor running, pour in the melted butter. Add cinnamon and salt, then process until combined.
- Divide the crumbs among the liners (about 1 tablespoon each) and press the crusts flat using a small flat-bottomed measuring cup or a glass. Set aside.
To Make the Pumpkin Cheesecake Filling
- In a food processor, add the cream cheese, pumpkin puree, brown sugar, vanilla, pumpkin pie spice, and a pinch of salt. Pulse until smooth, scraping the bowl as needed.
- Add the egg and pulse a few times until just combined. Scrape down the sides and pulse once or twice more so the mixture is smooth but not over-aerated.
- Divide the filling evenly into the liners (about 3 tablespoons per liner). The cups will be nearly full.
To Bake the Mini Pumpkin Cheesecakes
- Bake for 13–15 minutes until the edges are set and only the very centers are slightly jiggly. If you prefer firmer cheesecakes, bake an extra minute or two. Remove from oven and cool in the pan for about an hour.
- When slightly warm, remove the cheesecakes from the pan, cover, and chill in the refrigerator for at least two hours until cold.
- Optional: Top with vanilla whipped cream and a drizzle of salted caramel sauce before serving. Enjoy!
Notes
The filling can also be made with a stand mixer or hand mixer. Mix the first ingredients on medium-low until smooth, then add the egg and mix only until just combined to avoid adding too much air.
Store in an airtight container in the fridge up to five days, or freeze in an airtight container for up to six months.
Recommended Supplies
- Food processor (or mixing bowl and hand/stand mixer)
- 12-cup muffin pan
- Paper or parchment liners
- Small flat-bottomed measuring cup or glass for pressing crusts
- Offset spatula or small spoon for removing cheesecakes
Nutrition
I’d love to see your results: take a photo and tag the creator on Instagram or use a hashtag to share your mini pumpkin cheesecakes with others.